I'm not sure if this is the right place to talk about this but I hope you guys can advise me on handling this issue(this is a long post, you have been warned!):
Well to start I'm 28 years old with bachler degree in Information Security, I started my carrier in a company in the compliance section , we tried to implement ISO27002 (BS7799 at first) but didn't work out , my manager jumped the ship when he can and finally after 2 years of struggling (without clear management) it turned out that they just wanted a section called "compliance" just to say that they have one. anyway I left that company and started looking for a job into information security.
I ended up into another compliance job , based on my new boss : they wanted to prepare me to replace the current assist manager since he will retire soon , as a part of nationalization program they follow. anyway this didn't work well since the guy heard that conversation

so I ended up doing data entry : converting audit report from pdf into excel

(actually typing all points since they scan reports as pictures...). I didn't complain though and I was like "ohwell , I may as well identify areas of improvements!". every day I'll have 30-40 Audit reports of 5-10 pages that I have to summarize which I normally end up staying for few extra hours to finish. everything was cool until they sent the whole section for ISO27002 Lead Auditor course and I was the only one who pass.. not even my supervisor (the soon-to-be retired guy) , then my annual leaves started (2 week..) so when I came back I found almost 400 report. at this point its impossible to finish them off.
finally it turned out that my manager was brainwashed by the guy and both went to our CIO (as we are reporting to him) complaining that I'm not doing my job and I should be fired or asked to resign.
The guy called me , asked me few question , explained the situation and give me the option to move to technical security (Firewall ,IPS, VA etc) I was like I don't have any problem. my supervisor was fine and we almost the same age , I'm cool with anyone anyway. within 3 months I've lead the implementation of IPS , fully set VA process and made it on track. Automated most of the things so even when I'm off. I've actually enjoyed my job. I had sometime and extra money so I started my master studies off office hours. my manager was cool about it as it didn't effect my performance.
I realized that after 4years I have hardly anything to support my experience ,there is no regulation to enforce certificate here but I always loved the idea of having extra paper that at least says that I know something. I've done Security+(self-study) , SFCP (part of the training) then attempted for CISA and CISSP (Self-study) but only cleared the later. This is when my problems started....
The guy flipped 180 degree , I informed him that I managed it only to get "its outside our scoop and it will not help you ever, you have wasted your time" which I didn't take it personally , I was like ohwell , maybe here but somewhere else it sure will be. he started directing all his related tasks to me , don't approve anything until 5 mins before my working hours end so I end up spending 2-3h extra almost daily , then rush to master class. schadule "0 downtime" changes on weekend (which I'm cool with) and finally ended up complaining to the same CIO that I'm overstepping his authorities (the guy will approve something then magically forget about approving it even with an email/signature). finally I had to apologize to him and he cooled off (figured I don't want to start a fight with him and Its better If i started looking for another job).
I'm not into problems and when I started my certification /master studies; I encouraged and helped everyone within the team including him learning and getting better, 3 of 5 employees are starting their master studies

. so simply I wanna know:
anyone faced something like this ? did my focus on getting more education and doing self-study was wrong ? should I slow down or keep going to cover my early 4 years of no certification ?